ScanR workshop
Pushing the boundaries of high-content imaging

22. - 23. August 2024, Institute of Biophysics, Brno, Czechia

Tentative programme

The scanR workshop aims to bring together a community of leading scientists and experts in high-content imaging to discuss and share knowledge about the latest advancements in studying cellular processes using advanced microscopy techniques. Beyond lectures and talks, the workshop will include four hands-on sessions during which participants will be guided on how to prepare and acquire samples on ScanR high-content and IXplore SpinSR super-resolution microscopy systems, analyze acquired data using scanR and cellSens™ systems combined with TruAI deep learning module, and finally will receive tips and tricks how to visualize and present data from high-content imaging. The leaders of hands-on sessions are ready to train beginners in high-content imaging as well as advanced users. ScanR high-content and IXplore SpinSR super-resolution microscopy systems will be available during the entire workshop, and attendees will have the possibility to acquire and analyze their own samples. Dedicated sessions will facilitate networking between established experts and early-career researchers. Overall, this workshop will offer a friendly and easy-to-access environment for researchers at all levels to promote scientific excellence and collaboration to advance microscopic approaches in cell biology.

Day 1

09:30 - 10:00:
Arrival and registration
10:00 - 10:15:
Welcome and introductory remarks by organizers
10:15 - 11:00:

Keynote lecture by Luis Toledo: Microscopes, telescopes and quantitative imaging

11:00 - 11:20:

Talk by Kamila Burdova: The importance of long-patch DNA single-strand break repair during the cell cycle in human cells

11:20 - 11:40:

Talk by Pavel Moudry: DNA polymerase α-primase facilitates PARP inhibitorinduced replication fork acceleration

11:40 - 13:00:
Lunch and coffee with networking
13:00 - 13:30:

Talk by Manoel Veiga: TruAI fifth anniversary: a review of continuous improvements in deep learning

13:30 - 14:00:

Talk by Hana Polasek-Sedlackova: From single cells to single molecules: Introducing qAID workflow to study replication dynamics

14:00 - 14:20:
Coffee break
SpinSR system: from high-content imaging to super-resolution
led by Tomas Pop and Hana Polasek-Sedlackova
When CellSens meets ScanR
led by Tomas Jendrulek and Vaclav Bacovsky
Beyond image analysis limits with TruAI deep learning module
led by Manoel Veiga
Tips & Tricks on how to present high-content imaging data
led by Kumar Somyajit
18:00 - 22:00:
Social event with networking

Day 2

09:30 - 10:00:
Coffee and refreshments
10:00 - 10:45:

Keynote lecture by Kumar Somyajit: Expecting the unexpected: When highcontent imaging meets quantitative cell biology

10:45 - 11:05:

Talk by Jana Dobrovolna: High-throughput screening for novel factors involved in the metabolism of DNA secondary structures

11:05 - 11:25:

Talk by Panos Galanos: Beyond the nucleus: Exploring cell fate and metabolism with high-content microscopy

11:25 - 11:45:

Talk by Vaclav Bacovsky: Plant sexual dimorphism during meristem-to-organ transition - crossover between molecular and microscopic approaches

11:45 - 12:00:
Closing remarks
12:00 - 13:00:
Lunch and coffee with networking
SpinSR system: from high-content imaging to super-resolution
led by Tomas Pop and Hana Polasek-Sedlackova
When CellSens meets ScanR
led by Tomas Jendrulek and Vaclav Bacovsky
Beyond image analysis limits with TruAI deep learning module
led by Manoel Veiga
Tips & Tricks on how to present high-content imaging data
led by Kumar Somyajit